bwa_samse¶
Generate alignments in SAM format given single end reads, using both ‘bwa samse’.
Commands¶
- clean
- Remove all job data, not the Moa job itself
- run
- run bwa samse
Filesets¶
- fq_input
- fastq input file
- output_bam
output bam file
type: mapsource: fq_inputcategory: outputoptional: {}pattern: ./*.bam- sai_input
sai input directory - filenames must correspond to the fastq input files
type: mapsource: fq_inputcategory: inputoptional: Falsepattern: */*.sai
Parameters¶
- db
bwa database to align against
type: stringdefault: ``optional: False- max_aln_out
Maximum number of alignments to output in the XA tag for reads paired properly
type: integerdefault: 3optional: True
miscellaneous¶
- Backend
- ruff
- Author
- Yogini Idnani, Mark Fiers
- Creation date
- Wed Nov 25 17:06:48 2010
- Modification date
- unknown