bowtie_se
Run BOWTIE on an set of input files (query) vs a database index.
Commands
- clean
- Remove all job data, not the Moa job itself, note that this must be implemented by the template
- run
- no help defined
Filesets
- fq_input
- fastq input files directory
- output
Bam output file
type: map
source: fq_input
category: output
optional: {}
pattern: ./*.bam
Parameters
- ebwt_base
The (basename of the) bowtie database to use.
type: string
default: {}
optional: False
- extra_params
extra parameters to feed to bowtie
type: string
default: ``
optional: True
- input_format
Format of the input files
type: set
default: fastq
optional: True
- output_format
Format of the output file
type: set
default: bam
optional: True
miscellaneous
- Backend
- ruff
- Author
- Yogini Idnani, Mark Fiers
- Creation date
- Wed Nov 10 07:56:48 2010
- Modification date
- Wed Nov 10 07:56:48 2010