bwa_index

Bwa index builder

Builds a bwa index from a reference sequence

Commands

clean

Remove all job data

run

Create the index

Parameters

algorithm

Algorithm for constructing BWT index. Available options are ‘is’ and ‘bwtsw’

type: string

default: is

optional: True

color_space

input sequences are in the color space

type: boolean

default: False

optional: True

input_fasta

input fasta file for the database

type: file

default: {}

optional: False

prefix

Name of the bwa index to create

type: string

default: {}

optional: False

miscellaneous

Backend

ruff

Author

Mark Fiers, Yogini Idnani

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Wed Nov 10 07:56:48 2010