hagfish

Run hagfish_extract & hagfish_combine

Run the preparatory steps for hagfish

Commands

circos

convert to circos histogram data

clean

remove all Hagfish files

combine

no help defined

report

no help defined

run

Run hagfish

Filesets

input

“hagfish” input files

output

“hagfish” output files

type: map

source: input

category: output

optional: True

pattern: ./touch/*.touch

Parameters

circosbinsize

Binsize for generating circos formatted histograms

type: int

default: {}

optional: True

max_ok

Maximal acceptable insert size for an aligned pair. If omitted, hagfish will make an estimate

type: int

default: 0

optional: True

min_ok

Minimal acceptable insert size for an aligned pair. If omitted, hagfish will make an estimate

type: int

default: 0

optional: True

miscellaneous

Backend

ruff

Author

Mark Fiers

Creation date

Tue Mar 29 16:34:19 2011

Modification date

Thu, 19 May 2011 20:49:04 +1200